"He was frustrated that these groups came out in opposition to our budget agreement before we reached a budget agreement," Ryan, R-Wis., said of Boehner, R-Ohio, in an interview on NBC's 'Meet the Press' scheduled to air on Sunday.
Boehner said groups such as Heritage Action for America and Americans for Prosperity had "lost all credibility" for criticizing a budget proposal they hadn't seen, reports UPI.com.
"I think they're pushing our members in places where they don't want to be," Boehner said.
Boehner's comments drew praise from Washington business groups frustrated by conservative groups' inflexibility during the government shutdown.
"The business community has been uniformly frustrated at how strident the ideological groups have been in defiance of reason," said David French, senior vice president of government relations of the National Retail Federation.
Ryan said that while he was "frustrated too," the activist groups "are very important elements of our conservative family."
The budget plan passed the House Thursday 332-94, with 169 Republicans voting for it.